MH_dev_305

Query:

interacts_with DB06589?

Candidates:

DB00045#0 DB00200#1 DB00952#2 DB00982#3 DB01211#4 DB03459#5 DB04973#6 DB05897#7 DB08954#8

Answer:

DB01211

Graph:

Model Output:

ScoreDB00045DB00200DB00952DB00982DB01211DB03459DB04973DB05897DB08954
Men.0.00166402279864996670.0018041561124846340.00204262766055762770.0020534216891974210.98401200771331790.0015794938663020730.00188037101179361340.0017712585395202040.00319263176061213
Men. Rank753208461
Can.0.00221061287447810170.0028382732998579740.0042895595543086530.0068217962980270390.9730529785156250.00256700697354972360.00287470989860594270.00251880451105535030.0028262105770409107
Can. Rank842106375
Sum0.00387463578954339030.0046424292959272860.0063321869820356370.0088752182200551031.95706498622894290.00414650095626711850.00475508067756891250.00429006293416023250.0060188425704836845
Sum Rank852107463



0

Human lipopolysaccharide-binding protein ( P18428 REA ) and P08571 REA independently deliver triacylated lipoproteins to Q15399 REA ( Q15399 REA ) and O60603 REA and enhance formation of the ternary signaling complex . Bacterial lipoproteins are the most potent microbial agonists for the O60603 REA ( O60603 REA ) subfamily , and this pattern recognition event induces cellular activation , leading to host immune responses . Triacylated bacterial lipoproteins coordinately bind Q15399 REA and O60603 REA , resulting in a stable ternary complex that drives intracellular signaling . The sensitivity of TLR-expressing cells to lipoproteins is greatly enhanced by two lipid-binding serum proteins known as lipopolysaccharide-binding protein ( P18428 REA ) and soluble P08571 REA ( sCD 14 ) ; however , the physical mechanism that underlies this increased sensitivity is not known . To address this , we measured the ability of P18428 REA and sCD 14 to drive ternary complex formation between soluble extracellular domains of Q15399 REA and O60603 REA and a synthetic triacylated lipopeptide agonist . Importantly , addition of substoichiometric amounts of either P18428 REA or sCD 14 significantly enhanced formation of a TLR 1 · O60603 REA lipopeptide ternary complex as measured by size exclusion chromatography . However , neither P18428 REA nor sCD 14 was physically associated with the final ternary complex . Similar results were obtained using outer surface protein A ( OspA ) , a naturally occurring triacylated lipoprotein agonist from Borrelia burgdorferi . Activation studies revealed that either P18428 REA or sCD 14 sensitized TLR-expressing cells to nanogram levels of either the synthetic lipopeptide or DB00045 MEN agonist . Together , our results show that either P18428 REA or sCD 14 can drive ternary complex formation and TLR activation by acting as mobile carriers of triacylated lipopeptides or lipoproteins .

1

Synergistic proapoptotic effects of the two tyrosine kinase inhibitors pazopanib and lapatinib on multiple carcinoma cell lines . DB06589 SUB and lapatinib are two tyrosine kinase inhibitors that have been designed to inhibit the P15692 REA tyrosine kinase receptors 1 , 2 and 3 ( pazopanib ) , and the P00533 REA and P04626 REA receptors in a dual manner ( lapatinib ) . DB06589 SUB has also been reported to mediate inhibitory effect on a selected panel of additional tyrosine kinases such as P09619 REA and c-kit . Here , we report that pazopanib and lapatinib act synergistically to induce apoptosis of A549 non-small-cell lung cancer cells . Systematic assessment of the kinome revealed that both pazopanib and lapatinib inhibited dozens of different tyrosine kinases and that their combination could suppress the activity of some tyrosine kinases ( such as c - DB00134 ) that were not or only partially affected by either of the two agents alone . We also found that pazopanib and lapatinib induced selective changes in the transcriptome of A549 cells , some of which were specific for the combination of both agents . Analysis of a panel of unrelated human carcinoma cell lines revealed a signature of 52 genes whose up - or downregulation reflected the combined action of pazopanib and lapatinib . Indeed , pazopanib and lapatinib exerted synergistic cytotoxic effects on several distinct non-small-cell lung cancer cells as well as on unrelated carcinomas . Altogether , these results support the contention that combinations of tyrosine kinase inhibitors should be evaluated for synergistic antitumor effects . Such combinations may lead to a ' collapse ' of pro-survival signal transduction pathways that leads to apoptotic cell death .

2

Resistance of P04626 REA / neu-overexpressing tumor targets to lymphokine-activated-killer-cell-mediated lysis : evidence for deficiency of binding and post-binding events . P04626 REA / neu-overexpressing tumor cell lines are relatively resistant to lymphokine-activated killer ( Q96QP1 ) cell cytotoxicity when compared to P04626 REA / neu-nonexpressing lines . P04626 REA / neu + targets were also resistant to binding by Q96QP1 large granular lymphocytes ( LGL ) as shown by visualization at the single-cell level , a target monolayer binding assay and in " cold " target inhibition experiments . P04626 REA / neu + Q96QP1 - resistant ovarian cell lines demonstrated an absence of P05362 REA expression while expression of LFA - 3 , N - P62158 , laminin and beta 1 integrins was comparable to that of P04626 REA / neu - targets . In contrast , the P04626 REA / neu + breast cell line , SKBR - 3 , which was also resistant to lysis and binding by Q96QP1 LGL , demonstrated normal expression of P05362 REA . Anti - P05362 REA antibodies blocked binding and lysis of P04626 REA / neu - carcinoma targets by Q96QP1 cells , further supporting the notion that lack of P05362 REA expression on P04626 REA / neu + cells contributes to their resistance . The modest binding and lysis of P04626 REA / neu + targets by Q96QP1 cells was significantly inhibited by anti-LFA - 1 antibodies , suggesting the existence of another counter-receptor for LFA - 1 on P04626 REA / neu + targets . The following also supported deficiencies in post-binding events when P04626 REA / neu + cells resisted the lytic activity of Q96QP1 cells : ( a ) when the relative resistance to effector cell binding was overcome by exogenous lectin . P04626 REA / neu + cell lines were still resistant to Q96QP1 cytolysis , and ( b ) P04626 REA / neu + targets were resistant to perforin-containing granule extracts obtained from the CTLL-R 8 cytotoxic lymphocyte cell line . These results indicate that deficiency in effector binding as well as post-binding events contributes to the resistance of P04626 REA / neu-overexpressing tumor targets to Q96QP1 - cell-mediated lysis .

3

Differential effects of all-trans and 13 - cis-retinoic acid on mRNA levels of nuclear retinoic acid receptors in rat lung and liver . The effects of three retinoids , all-trans-retinoic acid ( all-trans-RA ) , 13 - DB00982 MEN , and etretin were examined on mRNA abundance of nuclear retinoic acid receptors ( P10276 REA , beta , and gamma ) in lung and liver of retinol deficient and chow fed rats . All-trans-RA increased lung P10826 REA mRNA levels 5 or 11 - fold in chow fed and retinol deficient rats , respectively . Similarly to lung , liver P10826 REA mRNA levels were 3 - fold higher in retinol deficient rats fed all-trans-RA than the rats fed cottonseed oil . Lung P13631 REA mRNA levels were also induced 2 - fold by all-trans-RA . In contrast to this , 13 - DB00982 MEN and etretin at equimolar doses failed to enhance lung or liver P10826 REA or lung P13631 REA mRNA levels in retinol deficient rats . These data for the first time show that all-trans-RA is more effective than its 13 - cis-isomer in regulating the expression of P10826 REA and gamma transcripts in adult animal .

4

Systemic delivery and pre-clinical evaluation of nanoparticles containing antisense oligonucleotides and siRNAs . By virtue of their potential to selectively silence oncogenic molecules in cancer cells , antisense oligonucleotides ( ASO ) and small interfering RNAs ( siRNAs ) are powerful tools for development of tailored anti-cancer drugs . The clinical benefit of ASO / siRNA therapeutic is , however , hampered due to poor pharmacokinetics and biodistribution , and suboptimal suppression of the target in tumor tissues . P04049 REA protein serine / threonine kinase is a druggable signaling molecule in cancer therapy . Our laboratory has developed cationic liposomes for systemic delivery of raf ASO ( DB04973 MEN ) and raf siRNA ( LErafsiRNA ) to human tumor xenografts grown in athymic mice . DB04973 MEN is also the first ASO containing liposomal drug tested in humans . In this article , we primarily focus on a modified formulation of systemically delivered cationic liposomes containing raf antisense oligonucleotide ( md - DB04973 MEN ) . The cationic liposomes were prepared using dimyristoyl 1,2- diacyl - 3 - trimethylammonium-propane ( DMTAP ) , phosphatidylcholine ( PC ) , and cholesterol ( CHOL ) . The toxicology , pharmacokinetics , biodistribution , target selectivity , and anti-tumor efficacy studies of md - DB04973 MEN were conducted in mice . We demonstrate that md - DB04973 MEN is the next generation of systemically delivered and well-tolerated antisense therapeutic suitable for clinical evaluation .

5

Design , synthesis and biological evaluation of pazopanib derivatives as antitumor agents . A novel series of pazopanib derivatives were designed , synthesized , and evaluated for their inhibitory activity against a series of kinases including P35968 REA , P00533 REA , P31749 REA , P37023 REA , and P00519 REA . The anti-angiogenic activities ex vivo of some compounds were also investigated . Compounds P2d and P2e demonstrated outstanding inhibitory activity against P35968 REA and P00519 REA and higher anti-angiogenic activity compared with DB06589 SUB , the reference standard . These two compounds ( P2d and P2e ) could be used as novel lead compounds for further development of anticancer agents .

6

Implantation of P15692 REA transfected preadipocytes improves vascularization of fibrin implants on the cylinder chorioallantoic membrane ( P62158 ) model . The successful substitution or augmentation of soft tissues by implantation of three dimensional cell constructs , consisting of human preadipocytes and fibrin glue as a carrier matrix , requires a rapid and homogeneous vascularization of the whole implant in order to provide a sufficient blood supply of centrally situated cells . Previous investigations have shown that under in vivo conditions primary human preadipocytes induce vascularization of fibrin matrices by secretion of several growth factors , such as P15692 REA and P09038 REA . The current study investigates whether vascularization of implants can be improved by transplantation of preadipocytes following transfection with a P15692 REA - vector . Transfection was performed by electroporation with an pCMX-GFP and pCMX-VEGF 165 vector . Transfection efficiency ( GFP expression ) and P15692 REA expression were determined in vitro by FACS analysis and P15692 REA immunoassay , respectively . In vivo investigations to determine the vascularization of the implants were performed on the cylinder chorioallantoic membrane ( P62158 ) . Four million P15692 REA transfected cells were transferred within a fibrin matrix onto the P62158 on the 7 ( th ) day of incubation and after 8 days the vascularization of the implant was histologically examined and evaluated by means of a computer-assisted image analysis program . Transfection of preadipocytes with the GFP vector by electroporation yielded transfection efficiencies between 12 % and 41 % of surviving cells . Results of the P15692 REA immunoassay demonstrated that P15692 REA expression was significantly higher following transfection . Investigations on the P62158 outlined a significantly higher rate of vascularization in the transfected vs . control population . Our investigations demonstrate that primary human preadipocytes can be successfully transfected by electroporation with a P15692 REA vector . The enhanced P15692 REA expression on transfected cells results in an increase of vascularization of the cell constructs on the P62158 .

7

The cloning and reintroduction into animal cells of a functional CAD gene , a dominant amplifiable genetic marker . Rodent cells resistant to DB03459 MEN , a specific inhibitor of the aspartate transcarbamylase activity of the multifunctional P27708 REA , overproduce CAD as a result of amplification of the CAD gene . We cloned a functional CAD gene from Syrian hamster cells using a cosmid vector . Two independently isolated cosmids containing CAD genes have inserts 40 and 45 kb long . We introduced the cloned genes into CAD-deficient Chinese hamster ovary ( CHO ) cell mutants by fusing them with protoplasts of Escherichia coli containing the cosmids . We also introduced the cloned genes into wild-type CHO cells by selecting cells that became resistant to high concentrations of DB03459 MEN following protoplast fusion . The transformants of the mutant and wild-type CHO cells contain multiple active copies of the donated Syrian hamster CAD genes . The cloned genes in three independent transformants are integrated into host-cell chromosomes at single locations identified by in situ hybridization . In two of these transformants , the genes are located in one X chromosome or in a chromosome resembling the X . In the third case , the genes are located in a small metacentric or rearranged chromosome .

8

Comprehensive molecular characterization of urothelial bladder carcinoma . Urothelial carcinoma of the bladder is a common malignancy that causes approximately 150,000 deaths per year worldwide . So far , no molecularly targeted agents have been approved for treatment of the disease . As part of The Cancer Genome Atlas project , we report here an integrated analysis of 131 urothelial carcinomas to provide a comprehensive landscape of molecular alterations . There were statistically significant recurrent mutations in 32 genes , including multiple genes involved in cell-cycle regulation , chromatin regulation , and kinase signalling pathways , as well as 9 genes not previously reported as significantly mutated in any cancer . RNA sequencing revealed four expression subtypes , two of which ( papillary-like and basal / squamous-like ) were also evident in microRNA sequencing and protein data . Whole-genome and RNA sequencing identified recurrent in-frame activating P22607 REA - Q9Y6A5 REA fusions and expression or integration of several viruses ( including HPV 16 ) that are associated with gene inactivation . Our analyses identified potential therapeutic targets in 69 % of the tumours , including 42 % with targets in the phosphatidylinositol - 3 - OH kinase / AKT / P42345 REA pathway and 45 % with targets ( including P04626 REA ) in the RTK / MAPK pathway . Chromatin regulatory genes were more frequently mutated in urothelial carcinoma than in any other common cancer studied so far , indicating the future possibility of targeted therapy for chromatin abnormalities .

9

Mammographic density and candidate gene variants : a twins and sisters study . BACKGROUND : Mammographic density , the light / white radiographic appearance on a mammogram that represents connective and epithelial tissue , is a strong risk factor for breast cancer which seems to be highly heritable . Little is known about its genetic determinants . METHODS : We studied 457 women from 207 sisterhoods ( 104 monozygotic twins , 182 dizygotic twins , and 171 singletons ) . Percentage mammographic density ( PMD ) as well as dense area and nondense area were calculated using a computer-assisted method . We measured six single nucleotide polymorphisms from six candidate genes ( P21964 REA , P14060 REA , P17936 REA , P04626 REA , P18074 REA , and O43542 REA ) . Associations between genotypes and mammographic measures were tested ( a ) cross-sectionally using a multivariate normal model fitted using FISHER that allowed separate correlations for monozygotic , dizygotic , and nontwin pairs and ( b ) within sister pairs using paired t tests . RESULTS : Cross-sectionally , each additional copy of the P14060 REA DB00174 ( 367 ) DB00156 variant allele was associated with lower PMD ( -3.47 % per allele ; SE = 1.65 ; P = 0.035 ) . Within-pair regression estimates confirmed this association . There was no evidence for an association between the mammographic density measures and any of the other variants studied . CONCLUSION : We have replicated an association between a variant in the P14060 REA gene and PMD , which suggests that P14060 REA may be genetic determinant of mammographic density .

10

Up-regulation of Q13224 REA subunit of DB01221 receptors in cerebellar granule neurons by Ca2 + / calmodulin kinase inhibitor KN93 . Recordings of DB01221 - activated currents from cerebellar granule neurons in culture revealed a developmental increase in current density accompanied by a slight decrease of the half-maximal effective concentration . At the same time , a decrease of DB01221 receptors comprising Q13224 REA subunits was demonstrated by the reduction in the antagonism of DB01221 currents by ifenprodil . DB08954 MEN antagonism increased after treatment for 24 h with KN93 - and KN62 - selective inhibitors of the Ca2 + / calmodulin-dependent protein kinases ( P62158 kinases ) , indicating a selective increase of receptor containing Q13224 REA subunit . This increase was observed at all ages tested : 4 days in vitro ( DIV 4 ) , DIV 6 , and DIV 13 . Western blot analysis with specific DB01221 receptor antibodies performed at DIV 6 confirmed the electrophysiological data . At this age , the negative control KN92 was ineffective . The increasing ifenprodil antagonism after KN93 treatment was proportionally greater in cells at DIV 13 than at DIV 4 . Treatment with DB01221 ( 100 microM ) of cerebellar cultures for 24 h produced a decrease in the DB01221 - induced current density by almost 50 % at all ages tested . DB08954 MEN antagonism , however , was unchanged . We propose that the expression of Q13224 REA subunits in cerebellar granule cells is selectively stimulated by the inhibition of P62158 kinases .

11

Human P30939 REA receptor-stimulated [ 35S ] GTPgammaS binding : correlation with inhibition of guinea pig dural plasma protein extravasation . To determine the potency and efficacy of P30939 REA receptor ligands , a [ 35S ] GTPgammaS binding assay was developed and optimized for the human P30939 REA receptor . Compounds which are known to be effective in the abortive treatment of migraine were tested for efficacy and potency in this assay . DB00952 MEN , sumatriptan , zolmitriptan , and rizatriptan all had agonist activity . The P30939 REA receptor ligand LY334370 ( 4 - fluoro-N - [ 3 - ( 1 - methyl - 4 - piperidinyl ) - 1H - indol - 5 - yl ] - benzamide ) was the most potent compound tested with an EC50 of 2.13 + / - 0.15 nM . LY302148 ( 5 - fluoro - 3 - [ 1 - [ 2 - ( 1 - methyl - 1H - pyrazol - 4 - yl ) ethyl ] - 4 - piperidinyl ] - 1H - ind ole ) , methysergide , LY306258 ( 3 - dimethylamino -2,3 , 4,9- tetrahydro - 1H - carbazol - 6 - ol ) , dihydroergotamine ( DHE ) , L -694,247 and CP -122,288 were also investigated for potency and efficacy . There was a statistically significant correlation between the pEC 50 for the stimulation of [ 35S ] GTPgammaS binding and the pID 50 for the inhibition of trigeminal nerve-stimulated dural plasma protein extravasation in the guinea pig . In the course of these studies , it was found that the purportedly selective P28221 REA receptor antagonist GR127935 inhibited P30939 REA receptor-stimulated [ 35S ] GTPgammaS binding with a Ki of 39.6 + / - 9.5 nM . These studies demonstrate that P30939 REA receptor-mediated stimulation of [ 35S ] GTPgammaS binding in a clonal cell system is a reproducible , high throughput assay that is predictive of an in vivo model of P30939 REA receptor activation .

12

DB06589 SUB for the treatment of renal cancer . INTRODUCTION : Dramatic advances in the care of patients with advanced renal cell carcinoma ( RCC ) have occurred over the last 10 years . Insights into the molecular pathogenesis of this disease have elucidated the importance of signaling cascades related to angiogenesis in the management of RCC . DB06589 SUB is a novel , small-molecule tyrosine kinase inhibitor that targets vascular endothelial growth factor receptors ( VEGFR ) - 1 , - 2 , and - 3 ; platelet-derived growth factor receptors ( P09619 REA ) - α and - β ; and c-kit tyrosine kinases . DB06589 SUB exhibits distinct pharmacokinetic and toxicity profiles compared with other agents in the class of P15692 REA signaling pathway inhibitors . AREAS COVERED : This review discusses the scientific rationale for the development of pazopanib , as well as the preclinical and clinical trials that led to the approval of pazopanib for patients with advanced RCC . The most recent information , including data from the 2010 meeting of the American Society of Clinical Oncology and the design of ongoing Phase III trials , is discussed . Finally , an algorithm utilizing level I evidence for the treatment of patients with this disease is proposed . EXPERT OPINION : The treatment of metastatic RCC has changed dramatically over the last 5 years . Six novel agents - sunitinib , sorafenib , temsirolimus , everolimus , bevacizumab ( used in combination with interferon ) , and pazopanib ( Votrient ) - have been approved for the treatment of metastatic RCC . The clinical data to date clearly place pazopanib among the most active of the targeted therapies .

13

Synergistic inhibition of breast cancer cell lines with a dual inhibitor of P00533 REA - HER - 2 / neu and a Bcl - 2 inhibitor . The epidermal growth factor receptor ( P00533 REA ) ( ErbB 1 ) and HER - 2 / neu ( ErbB 2 ) are members of the ErbB family of receptor tyrosine kinases . These receptors are overexpressed in a variety of human tumors and overexpression generally correlates with poor prognosis and decreased survival . DB01259 , a reversible inhibitor of both P00533 REA and HER - 2 / neu , has shown some success in achieving clinical responses in heavily pretreated advanced cancer patients . GW2974 is a reversible dual inhibitor similar to lapatinib , but GW2974 was not progressed to clinical trials due to pharmacokinetic issues . Bcl - 2 , an anti-apoptotic protein , is also overexpressed in a number of human tumors . Bcl - 2 inhibitors induce apoptosis and sensitize cancer cells to other therapies . The purpose of this study was to assess the effects of combining ErbB and Bcl - 2 inhibitors on the growth of human breast cancer cell lines . P00533 REA / HER - 2 / neu tyrosine kinase inhibitors ( lapatinib and GW2974 ) were combined with Bcl - 2 inhibitors ( HA14 - 1 or GX15 - 070 ) and the anti-proliferative effects were determined by the MTT tetrazolium dye assay . Combinations were tested in MCF - 7 human breast cancer cells , a HER - 2 / neu transfected MCF - 7 cell line ( MCF / 18 ) , and a tamoxifen-resistant MCF - 7 cell line ( Q99707 REA - 3 ) . A synergistic inhibitory effect was observed with the combination of inhibitors of P00533 REA - HER - 2 / neu ( lapatinib or GW2974 ) and Bcl - 2 ( GX15 - 070 or HA14 - 1 ) on the growth of the MCF - 7 , MCF / 18 , and Q99707 REA - 3 human breast cancer cell lines . This study suggests that simultaneously blocking the ErbB family of receptor tyrosine kinases and Bcl - 2 family of proteins may be a benefit to breast cancer patients .

14

The achilles heel of ErbB - 2 / P04626 REA : regulation by the Hsp 90 chaperone machine and potential for pharmacological intervention . Signal transduction mediated by ErbB / HER receptor tyrosine kinases is crucial for the development and maintenance of epithelial tissues , and aberrant signaling is frequently associated with malignancies of epithelial origin . This review focuses on the roles played by the Hsp 90 chaperone machinery in the regulation of signaling through the ErbB / HER network , and discusses potential therapeutic strategies that disrupt chaperone functions . Hsp 90 and its associated cochaperones regulate ErbB signal transduction through multiple mechanisms . The chaperone system controls the stability of the nascent forms of both ErbB - 1 ( P01133 REA - receptor ) and ErbB - 2 / P04626 REA , while regulation of the mature form is restricted to ErbB - 2 . Regulation by the Hsp 90 complex extends to downstream effectors of ErbB signaling , namely P04049 REA , Pdk - 1 and Akt / P31749 REA . Disrupting the function of Hsp 90 results in the degradation of both the receptors and their effectors , thereby inhibiting tumor cell growth . The importance of an Hsp 90 - recognition motif located within the kinase domain of ErbB - 2 is discussed , as well as a direct role for Hsp 90 in regulating tyrosine kinase activity . In light of recent observations , we emphasize the ability of specific tyrosine kinase inhibitors to selectively target ErbB - 2 to the chaperone-mediated degradation pathway . ErbB-specific drugs are already used to treat cancers , and clinical trials are underway for additional compounds that intercept ErbB signaling , including drugs that target Hsp 90 . Hence , the dependence of ErbB - 2 upon Hsp 90 reveals an Achilles heel , which opens a window of opportunity for combating cancers driven by the ErbB / HER signaling network .

15

All-trans-retinoic Acid Modulates the Plasticity and Inhibits the Motility of Breast Cancer Cells : ROLE OF P46531 REA AND TRANSFORMING GROWTH FACTOR ( TGFβ ) . All-trans-retinoic acid ( DB00755 ) is a natural compound proposed for the treatment / chemoprevention of breast cancer . Increasing evidence indicates that aberrant regulation of epithelial-to-mesenchymal transition ( EMT ) is a determinant of the cancer cell invasive and metastatic behavior . The effects of DB00755 on EMT are largely unknown . In P04626 REA - positive SKBR 3 and UACC 812 cells , showing co-amplification of the P04626 REA and P10276 REA genes , DB00755 activates a RARα-dependent epithelial differentiation program . In SKBR 3 cells , this causes the formation / reorganization of adherens and tight junctions . Epithelial differentiation and augmented cell-cell contacts underlie the anti-migratory action exerted by the retinoid in cells exposed to the EMT-inducing factors P01133 REA and heregulin-β 1 . Down-regulation of P46531 REA , an emerging EMT modulator , is involved in the inhibition of motility by DB00755 . Indeed , the retinoid blocks P46531 REA up-regulation by P01133 REA and / or heregulin-β 1 . Pharmacological inhibition of γ-secretase and P46531 REA processing also abrogates SKBR 3 cell migration . Stimulation of TGFβ contributes to the anti-migratory effect of DB00755 . The retinoid switches TGFβ from an EMT-inducing and pro-migratory determinant to an anti-migratory mediator . Inhibition of the P46531 REA pathway not only plays a role in the anti-migratory action of DB00755 ; it is relevant also for the anti-proliferative activity of the retinoid in HCC 1599 breast cancer cells , which are addicted to P46531 REA for growth / viability . This effect is enhanced by the combination of DB00755 and the γ-secretase inhibitor N - ( N - ( 3,5- difluorophenacetyl ) - l-alanyl ) - S-phenylglycine t-butyl ester , supporting the concept that the two compounds act at the transcriptional and post-translational levels along the P46531 REA pathway .

16

[ Measurement of rifampicin and clarithromycin in serum by high-performance liquid chromatography with electrochemical detection ] . DB01045 ( RFP ) induces hepatic drug-metabolizing enzymes , making drug interactions a very important clinical problem . DB01211 MENMAX DB01211 MEN ( P62158 ) metabolism is reportedly enhanced by induction of hepatic drug-metabolizing enzymes ( P08684 REA ) by RFP , so that the blood lend of P62158 decreases when RFP is administered concurrently . We connected an electrochemical detector to a high-performance liquid chromatograph ( HPLC ) for simple , rapid , easy measurement of blood concentrations of RFP and P62158 . Using samples of patient serum , normal serum , and reference standards , we compared HPLC by an external laboratory and the results of LC / MS / MS analysis with those of this new assay . A strong correlation was seen between our HPLC results and those of the external laboratory in RFP levels ( r = 0.975 , p < 0.01 ) . A strong correlation was also seen between results we obtained for P62158 with the electrochemical detector in this assay and values measured by LC / MS / MS analysis ( r = 0.995 , p < 0.01 ) . Our method enabled simple , rapid measurement of RFP and P62158 by connecting the HPLC and electrochemical detector in tandem . This system was used to modulate dosage during combined therapy with RFP and P62158 . The therapeutic effect for nontuberculous mycobacteriosis is expected to improve , and our HPLC is expected to be useful for simple , rapid , easy measurement of blood concentrations .

17

DB06589 SUB inhibits the activation of P09619 REA β-expressing astrocytes in the brain metastatic microenvironment of breast cancer cells . Brain metastases occur in more than one-third of metastatic breast cancer patients whose tumors overexpress P04626 REA or are triple negative . Brain colonization of cancer cells occurs in a unique environment , containing microglia , oligodendrocytes , astrocytes , and neurons . Although a neuroinflammatory response has been documented in brain metastasis , its contribution to cancer progression and therapy remains poorly understood . Using an experimental brain metastasis model , we characterized the brain metastatic microenvironment of brain tropic , P04626 REA - transfected MDA-MB - 231 human breast carcinoma cells ( 231 - BR - P04626 REA ) . A previously unidentified subpopulation of metastasis-associated astrocytes expressing phosphorylated platelet-derived growth factor receptor β ( at tyrosine 751 ; p751 - P09619 REA β ) was identified around perivascular brain micrometastases . p751 - P09619 REA β ( + ) astrocytes were also identified in human brain metastases from eight craniotomy specimens and in primary cultures of astrocyte-enriched glial cells . Previously , we reported that pazopanib , a multispecific tyrosine kinase inhibitor , prevented the outgrowth of 231 - BR - P04626 REA large brain metastases by 73 % . Here , we evaluated the effect of pazopanib on the brain neuroinflammatory microenvironment . DB06589 SUB treatment resulted in 70 % ( P = 0.023 ) decrease of the p751 - P09619 REA β ( + ) astrocyte population , at the lowest dose of 30 mg / kg , twice daily . Collectively , the data identify a subpopulation of activated astrocytes in the subclinical perivascular stage of brain metastases and show that they are inhibitable by pazopanib , suggesting its potential to prevent the development of brain micrometastases in breast cancer patients .

18

Functional methionine synthase deficiency ( cblE and cblG ) : clinical and biochemical heterogeneity . Functional methionine synthase deficiency is generally characterized by homocystinuria and hypomethioninemia in the absence of methylmalonic aciduria . Patients are divided into two classes , cblE and cblG , on the basis of complementation analysis . Presentation has usually been in the first 2 years of life , but one patient came to medical attention at age 21 years with symptoms initially diagnosed as multiple sclerosis . Common findings among 11 patients ( 4 with cblE and 7 with cblG ) have included megaloblastic anemia ( all patients ) and various neurological deficits including developmental retardation ( 10 patients ) , cerebral atrophy ( 8 patients ) , hypotonia ( 7 patients ) , EEG abnormalities ( 6 patients ) , and nystagmus ( 5 patients ) . Hypertonia , seizures , blindness , and ataxia were less frequent . All patients have responded to therapy with cobalamin with resolution of anemia and biochemical abnormalities ; neurological deficits resolved more slowly and in some cases incompletely . DB00200 MEN has been more effective than cyanocobalamin . Fibroblasts from patients with cblE ( 5 patients ) and cblG ( 6 patients ) all showed decreased intracellular levels of methylcobalamin ( DB03614 ) and decreased incorporation of label from 5 - methyltetrahydrofolate into macromolecules , suggesting decreased activity of the DB03614 - dependent enzyme methionine synthase . Q99707 REA specific activity in extracts of all cblE fibroblasts was normal or near-normal under standard reducing conditions ; synthase specific activity in extracts of 5 cblG patients was low but was high in a 6th patient measured in another laboratory . Thus , there is heterogeneity among patients with functional methionine synthase deficiency both in clinical presentation and in the results of biochemical studies of cultured cells .

19

Factors regulating insulin-like growth factor-binding protein - 3 binding , processing , and potentiation of insulin-like growth factor action . In this study , we investigated the effects of various biochemical and pharmacological agents on insulin-like growth factor ( IGF ) - binding protein - 3 ( P17936 REA ) cell binding and action in cultured bovine fibroblasts . When cells were preincubated for 48 h with 50 nM recombinant human ( rh ) P17936 REA , P05019 REA - stimulated [ 3H ] aminoisobutyric acid ( [ 125H ] AIB ) uptake was enhanced 2 - to 3 - fold . The addition of cytoskeletal disrupting agents during the preincubation with DB05897 MEN did not affect P17936 REA potentiation of P05019 REA action , nor did a variety of serine , aspartate , and metalloproteinase inhibitors . On the other hand , ammonium chloride and chloroquine , weak bases that neutralize the pH of acidic cell compartments , blocked P17936 REA potentiation of P05019 REA - stimulated [ 3H ] AIB uptake . Chloroquine and ammonium chloride had no effect alone and did not inhibit P08069 REA binding or action in the absence of DB05897 MEN . Bafilomycin A , a specific inhibitor of DB00171 - dependent hydrogen ion pumps , also inhibited P17936 REA potentiation of P05019 REA - stimulated [ 3H ] AIB uptake . Competitive [ 125I ] P05019 REA binding and affinity cross-linking experiments suggested structure / function changes in cell-bound P17936 REA that were altered in the presence of chloroquine and bafilomycin . DB01109 markedly decreased initial P17936 REA cell adherence , but could not promote dissociation of P17936 REA from cells after the 48 - h preincubation . Moreover , heparin did not inhibit P17936 REA potentiation of P05019 REA action . In summary , these data indicate that P17936 REA undergoes specific pH-dependent structural and / or environmental modifications that mediate the enhancing effect of P17936 REA on P05019 REA action in bovine fibroblasts . They also suggest that P17936 REA binding to heparin-like molecules on the cell surface is not directly involved in this process .

20

Intraepithelial CD8 - positive T lymphocytes predict survival for patients with serous stage III ovarian carcinomas : relevance of clonal selection of T lymphocytes . BACKGROUND : The aim of this study was to investigate the prognostic effect of tumour-infiltrating lymphocytes ( TILs ) in serous stage III ovarian carcinoma to determine Q15399 REA clonality and to correlate this to Her 2 / neu expression . METHODS : DB03843 - fixed and paraffin-embedded ovarian carcinomas were examined for P11836 - , CD3 - , P01730 REA - and CD8 - positive lymphocytes ( n = 100 ) , and for Her 2 / neu-positive tumour cells ( n = 55/100 ) by immunohistochemistry . Clonality analysis was carried out by T-cell receptor gamma ( TCRgamma ) gene rearrangements ( n = 93/100 ) . Statistical analyses included experimental and clinico-pathological variables , as well as disease-free ( DFS ) and overall ( OS ) survival . RESULTS : P11836 - positive B lymphocytes were present in 57.7 % ( stromal ) / 33.0 % ( intraepithelial ) and CD3 - positive T lymphocytes in 99.0 % ( stromal ) / 90.2 % ( intraepithelial ) of ovarian carcinomas . Intraepithelial CD3 - positive T lymphocytes were correlated with improved DFS in optimally debulked patients ( P= 0.0402 ) . Intraepithelial CD8 - positive T lymphocytes were correlated with improved OS in all optimally debulked patients ( P= 0.0201 ) and in those undergoing paclitaxel / carboplatin therapy ( P= 0.0092 ) . Finally , rarified and clonal TCRgamma gene rearrangements were detected in 37 out of 93 ( 39.8 % ) and 15 out of 93 ( 16.1 % ) cases , respectively . This was marginally associated with improved DFS ( P= 0.0873 ) . Despite a significant correlation of P04626 REA / neu status and intraepithelial CD8 - positive lymphocytes ( P= 0.0264 ) , this was non-directional ( R = -0.257 ; P= 0.0626 ) . CONCLUSION : Improved survival of ovarian cancer patients is related to the infiltration , clonal selection and intraepithelial persistence of T lymphocytes .

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Variants of dopamine and serotonin candidate genes as predictors of response to risperidone treatment in first-episode schizophrenia . AIMS : Abnormalities in dopaminergic and serotonergic transmission systems are thought to be involved in the pathophysiology of schizophrenia and the mechanisms underlying the therapeutic effects of antipsychotics . We conducted a pharmacogenetic study to evaluate whether variants in dopamine-related genes ( P21728 REA - P21918 REA , P31749 REA and GSK 3beta ) and serotonin receptor genes ( P08908 REA , P28222 REA , P28221 REA , P28223 REA , P28335 REA , P50406 REA and P34969 REA ) can be used to predict the efficacy of risperidone treatment for schizophrenia . MATERIALS & METHODS : A total of 120 first-episode neuroleptic-naive schizophrenia patients were treated with risperidone monotherapy for 8 weeks and clinical symptoms were evaluated by the Positive and Negative Syndrome Scale . RESULTS : Among the 30 variants that we examined , two SNPs in P14416 REA ( - 241A > G [ rs1799978 ] and TaqIA [ rs1800497 ] ) and two SNPs in P31749 REA ( P31749 REA - SNP 1 [ rs3803300 ] and P31749 REA - SNP 5 [ rs2494732 ] ) were significant predictors of treatment response to risperidone . CONCLUSION : These data suggest that the SNPs in P14416 REA and P31749 REA may influence the treatment response to risperidone in schizophrenia patients .

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Rheb protein binds CAD ( carbamoyl-phosphate synthetase 2 , aspartate transcarbamoylase , and dihydroorotase ) protein in a GTP - and effector domain-dependent manner and influences its cellular localization and carbamoyl-phosphate synthetase ( CPSase ) activity . Rheb small GTPases , which consist of Rheb 1 and Q8TAI7 ( also known as RhebL 1 ) in mammalian cells , are unique members of the Ras superfamily and play central roles in regulating protein synthesis and cell growth by activating P42345 REA . To gain further insight into the function of Rheb , we carried out a search for Rheb-binding proteins and found that Rheb binds to P27708 REA ( carbamoyl-phosphate synthetase 2 , aspartate transcarbamoylase , and dihydroorotase ) , a multifunctional enzyme required for the de novo synthesis of pyrimidine nucleotides . CAD binding is more pronounced with Q8TAI7 than with Rheb 1 . Rheb binds CAD in a GTP - and effector domain-dependent manner . The region of CAD where Rheb binds is located at the C-terminal region of the carbamoyl-phosphate synthetase domain and not in the dihydroorotase and aspartate transcarbamoylase domains . Rheb stimulated carbamoyl-phosphate synthetase activity of CAD in vitro . In addition , an elevated level of intracellular UTP pyrimidine nucleotide was observed in Tsc 2 - deficient cells , which was attenuated by knocking down of Rheb . Immunostaining analysis showed that expression of Rheb leads to increased accumulation of CAD on lysosomes . Both a farnesyltransferase inhibitor that blocks membrane association of Rheb and knockdown of Rheb mislocalized CAD . These results establish CAD as a downstream effector of Rheb and suggest a possible role of Rheb in regulating de novo pyrimidine nucleotide synthesis .